Last data update: 2014.03.03

R: Summary tables from pepStat
restabR Documentation

Summary tables from pepStat

Description

This is the result tables of a peptide microarray analysis using pepStat. It summarizes the antibody binding prediction for each peptide, depending on the group. restab_aggregate has one row per peptide. Peptides that belong to more than one clade have a single entry. restab has one row per peptide per clade. Each clade has been normalized separately.

Format

A data.frame containing 1964 rows and 9 variables for restab. 1423 rows and 9 variables for restab_aggregate.

  • peptide: Peptide sequences

  • position: The position of peptides on the reference sequence HXB2.

  • space: The location of the peptide. Here, gp160, the evelope of HIV.

  • start: The start coordinate of the peptide on the reference sequence.

  • end: The end coordinate of the peptide on the reference sequence.

  • widt: The length of the peptides.

  • clade: The virus subtypes that the peptide belongs to.

  • group1: Frequency of antibody binding events in the subjects of group1 for that peptide.

  • group2: Frequency of antibody binding events in the subjects of group2 for that peptide.

Note

For more information, see ?pepStat::restab.

Results