Last data update: 2014.03.03

 R: calculate read per million (RPM) for replicates analysis
calculateBatchRPMR Documentation

calculate read per million (RPM) for replicates analysis

Description

Normalize 3C-Seq data by transforming raw reads to read per million per each region for replication analysis

Usage

calculateBatchRPM(object,normalized_method=c("powerlawFittedRPM","normalRPM"))

Arguments

object

r3CseqInBatch object

normalized_method

character. method of normalization (default=powerlawFittedRPM)

Author(s)

S. Thongjuea

See Also

calculateRPM, expRPM contrRPM

Examples

#See the vignette

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO