character, path to directory which should
be read recursively.
removeCalibrationScans
logical, if TRUE all scans in
directories called “[Cc]alibration” will be ignored.
removeMetaData
logical, to save memory metadata could be
deleted.
rewriteNames
logical, if TRUE all list elements get
an unique name from metadata otherwise file path is used.
fileExtension
character, file extension of mzXML formatted
files. The directory is only searched for fileExtension files.
In most cases it would be “"mzXML"” but sometimes you have to use
“xml”.
verbose
logical, verbose output?
Details
See readMzXmlFile.
Value
A list of spectra.
[[1]]spectrum$mass: A vector of calculated mass.
[[1]]spectrum$intensity: A vector of intensity values.
[[1]]metaData: A list of metaData depending on read spectrum.