Last data update: 2014.03.03
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R: Genomic plots with rnaSeqMap
plotGeneCoverage | R Documentation |
Genomic plots with rnaSeqMap
Description
Various plots of genomic coverage for experiments.
Usage
plotGeneCoverage(gene_id, ex)
plotRegionCoverage(chr, start, end, strand, ex)
plotExonCoverage (exon_id,ex)
plotCoverageHistogram (chr,start,end,strand,ex, skip)
plotGeneExonCoverage(gene_id, ex)
plotSI(chr,start,end,strand, exp1, exp2 )
Arguments
ex |
vectors of experiment numbers to plot
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exp1, exp2 |
experiment numbers for splicing index
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gene_id |
Ensembl gene ID
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exon_id |
Ensembl exon ID
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chr |
Chromosome
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start |
Start position of region on the chromosome
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end |
Start position of region on the chromosome
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strand |
Strand
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skip |
size of the bucket in histogram
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Author(s)
Michal Okoniewski, Anna Lesniewska
Examples
# if (xmapConnected())
# {
# plotGeneCoverage( "ENSG00000144567", 1:3) # plotting FAM134A for experiments 1,2,3
# plotRegionCoverage( 2, 220040947, 220050201, 1, 1:3 ) # the same, using coordinates
# }
Results
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