Last data update: 2014.03.03

 R: regionCoverage
regionCoverageR Documentation

regionCoverage

Description

Finds all the reads for a genomic range

Usage

regionCoverage(chr, start, end, strand, ex, db = "FALSE" )

Arguments

chr

Chromosome

start

Start of the region on a chromosome

end

End of the region on a chromosome

strand

Genome strand: 1 or -1

ex

experiment

db

Use database (SQL) implementation of the algorithm

Value

coverage vector, independent from NucleotideDistr

Author(s)

Michal Okoniewski, Anna Lesniewska

Examples

#  if (xmapConnected())  
#  {
#   tmp <- regionCoverage( 1, 10000, 20000, 1,3)
#  }

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO