add_rank_col

Description

This method takes in input a dataframe containing the results of an siRNA screen. Then it adds a set of column that are useful for sorting to the dataframe. At the moment the following sorting columns are provided: - column with the median value of the siRNA score for each gene - columns that comes out from the execution of the RSA sorting method (Renate Konig et al.)

Usage

add_rank_col(screen, reverse=FALSE,  scoreColName="score", geneColName="GeneID")

Arguments

Value

screen data frame with sorting columns added.

Author(s)

Andrea Franceschini

References

A probability-based approach for the analysis of large-scale RNAi screens. Renate Konig et al. Nature Methods 2007

Examples

 data(uuk_screen)
 uuk_screen_ranked = add_rank_col(uuk_screen[1:100,])

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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R is a collaborative project with many contributors.
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'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(scsR)
Error in library(scsR) : there is no package called 'scsR'
Execution halted