add_seed

Description

This method takes in input a dataframe containing the results of an siRNA screen. This screen must contain the siRNA sequences in a dedicated column (the sequences have to be provided in the guide/antisense orientation). Then it adds a column with the seed of the siRNA sequences.

Usage

add_seed(df, seqColName="siRNA_seq", seedLength=7, startPosition=2)

Arguments

Value

screen data frame with the seed column added.

Author(s)

Andrea Franceschini

Examples

 data(uuk_screen)
 seed_uuk_screen = add_seed(uuk_screen[1:100,])

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(scsR)
Error in library(scsR) : there is no package called 'scsR'
Execution halted