Constructing a pwm object

Description

This function constructs an object of class pwm from a matrix. It checks that the matrix has correct dimensions and that columns add up to 1.0.

Usage

makePWM(pwm, alphabet="DNA")

Arguments

Value

An object of class pwm.

Author(s)

Oliver Bembom, bembom@berkeley.edu

Examples

mFile <- system.file("Exfiles/pwm1", package="seqLogo")
m <- read.table(mFile)
pwm <- makePWM(m)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(seqLogo)
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/seqLogo/makePWM.Rd_%03d_medium.png", width=480, height=480)
> ### Name: makePWM
> ### Title: Constructing a pwm object
> ### Aliases: makePWM
> ### Keywords: misc
> 
> ### ** Examples
> 
> mFile <- system.file("Exfiles/pwm1", package="seqLogo")
> m <- read.table(mFile)
> pwm <- makePWM(m)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>