A class to store the results of makeMaster. This class
stored the 2 versions (orders) of the master final peptide data.
Objects from the Class
Objects can be created by calls of the form makeMaster.
Slots
masters:
Object of class "list" storing the 2
master data.frame obejcts.
pepfiles:
Object of class "character" with the
list of final peptide iinput files.
fdr:
Object of class "numeric" with the
peptide false discovery applied when creating the filter.
method:
Object of class "character" with the
peptide p-value adjustment method. One of BH (default),
qval or Bonferroni.
orders:
Object of class "list" with the
numeric vectors specifying the order of pepfiles
used to generate the respective mastersdata.frames.
Methods
show
signature(object = "MasterPeptides"): to print a
textual representation of the instance.
Author(s)
Laurent Gatto
References
Improving qualitative and quantitative performance for MSE-based label
free proteomics, N.J. Bond, P.V. Shliaha, K.S. Lilley and L. Gatto,
Journal of Proteome Research, 2013, in press.
The Effects of Travelling Wave Ion Mobility Separation on Data
Independent Acquisition in Proteomics Studies, P.V. Shliaha, N.J. Bond,
L. Gatto and K.S. Lilley, Journal of Proteome Research, 2013, in press.