Last data update: 2014.03.03

 R: trait-associated SNPs in dbGaP and NHGRI downloaded from...
taSNPR Documentation

trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser

Description

A GRange object taSNP contains trait-associated SNPs from dbGaP and NHGRI downloaded from Association Results Browser.

Usage

data(taSNP)

Value

The data frame taSNP contains the following columns

Trait

Trait

Trait Class

Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class

SNP_ID

SNP rs number

p.value

GWAS SNP p-value

seqnames

Chromosome

ranges

Chromosome position

Context

SNP functional class

GENE_NAME

Nearest gene name

GENE_START

Gene start genomic position

GENE_END

Gene end genomic position

GENE_STRAND

Gene strand

Author(s)

Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO