Last data update: 2014.03.03
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R: linkage disequilibrium (>0.8) within 100kb SNPs of all...
linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI
Description
A GRange object taSNPLD contains linkage disequilibrium (>0.8) SNPs of all trait-associated SNPs from dbGaP and NHGRI.
Usage
data(taSNPLD)
Value
The data frame taSNPLD contains four columns,
SNP_ID |
SNP rs number
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seqnames |
Chromosome number associated with rs number
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ranges |
Chromosomal position, in base pairs, associated with rs number
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Trait |
Trait the SNP is associated with
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Trait Class |
Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class
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Author(s)
Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>
Results
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