Last data update: 2014.03.03

 R: Hidden Markov Model parameter estimation
HMMparamsR Documentation

Hidden Markov Model parameter estimation

Description

This function is used by the uHMMinterface to estimate parameters of a Hidden Markov Model.

Usage

HMMparams(stateSeq, symbolSeq)

Arguments

stateSeq

a numeric vector of state sequencing.

symbolSeq

a numeric vector of symbol sequencing.

Value

HMMparams returns a list containing :

trans

The transition matrix.

emis

The emission matrix.

startProb

The vector of initial probability distribution (initial states are supposed equiprobable).

See Also

transitionMatrix emissionMatrix

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO