R Graphical Manual

Last data update: 2014.03.03

R: Export clusters as BED track

exportClusters

R Documentation

Export clusters as BED track

Export clusters as BED track, compatible with the UCSC genome browser

exportClusters(clusters, filename = 'wavClusters.bed', trackname =
'wavClusters', description = 'wavClusters')

`clusters`	GRanges object containing individual clusters as identified by the filterClusters function
`filename`	A character defining the BED file name. Default to "wavClusters.bed"
`trackname`	A character defining the track.name of the BED file. Default to "wavClusters"
`description`	A character defining the description of the BED file. Default to "wavClusters"

A BED file of the exported GRanges object

Clusters are color coded according to their strand information (red for the plus strand, blue for the minus strand).

Federico Comoglio