R Graphical Manual

Last data update: 2014.03.03

R: Export high-confidence substitutions as BED track

exportHighConfSub

R Documentation

Export high-confidence substitutions as BED track

Export high-confidence substitutions as BED track, compatible with the UCSC genome browser

exportHighConfSub(highConfSub, filename = 'highConfSub.bed',
trackname = 'highConfSub', description = 'highConfSub')

`highConfSub`	GRanges object containing high-confidence substitution sites as returned by the getHighConfSub function
`filename`	A character defining the BED file name. Default to "wavClusters.bed"
`trackname`	A character defining the track.name of the BED file. Default to "wavClusters"
`description`	A character defining the description of the BED file. Default to "wavClusters"

A BED file of the exported GRanges object

Substitutions are color coded according to their strand information (red for the plus strand, blue for the minus strand).

Federico Comoglio