Last data update: 2014.03.03

 R: Export cluster sequences for motif search analysis
exportSequencesR Documentation

Export cluster sequences for motif search analysis

Description

Export cluster sequences for motif search analysis (FASTA format), e.g. using MEME-ChIP

Usage

exportSequences(clusters, filename = 'wavClusters.fasta')

Arguments

clusters

GRanges object containing individual clusters as identified by the filterClusters function

filename

A character defining the BED file name. Default to "wavClusters.fasta"

Value

A FASTA file containing the cluster sequences

Author(s)

Federico Comoglio

See Also

filterClusters

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO