Class "genomeInfo"

Description

class to store the genomic info from a WfmFit-class object

Objects from the Class

Objects can be created by calls of the form new("GenomeInfo", chromosome, strand, minPos, maxPos).

Slots

chromosome:

Object of class "vector" ~~

strand:

Object of class "character" ~~

minPos:

Object of class "numeric" ~~

maxPos:

Object of class "numeric" ~~

Methods

initialize

signature(.Object = "GenomeInfo"): ...

show

signature(.Object = "GenomeInfo"): ...

Author(s)

Kristof De Beuf <kristof.debeuf@ugent.be>

Examples

showClass("GenomeInfo")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(waveTiling)
Loading required package: oligo
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: oligoClasses
Welcome to oligoClasses version 1.34.0
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
================================================================================
Welcome to oligo version 1.36.1
================================================================================
Loading required package: GenomeGraphs
Loading required package: biomaRt
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/waveTiling/GenomeInfo-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: GenomeInfo-class
> ### Title: Class "genomeInfo"
> ### Aliases: GenomeInfo-class GenomeInfo initialize,GenomeInfo-method
> ###   show,GenomeInfo-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("GenomeInfo")
Class "GenomeInfo" [package "waveTiling"]

Slots:
                                                  
Name:  chromosome     strand     minPos     maxPos
Class:     vector  character    numeric    numeric
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>