Class "WfmFitTime"

Description

class to store model fits with a time-course design in the wavelet-based transcriptome analysis.

Objects from the Class

Objects can be created by calls of the form new("WfmFitTime").

Slots

betaWav:

Object of class "matrix" ~~

varbetaWav:

Object of class "matrix" ~~

smoothPar:

Object of class "matrix" ~~

varEps:

Object of class "numeric" ~~

dataOrigSpace:

Object of class "matrix" ~~

dataWaveletSpace:

Object of class "matrix" ~~

design.matrix:

Object of class "matrix" ~~

phenoData:

Object of class "data.frame" ~~

genome.info:

Object of class "genomeInfo" ~~

n.levels:

Object of class "numeric" ~~

probePosition:

Object of class "numeric" ~~

wave.filt:

Object of class "character" ~~

Kj:

Object of class "numeric" ~~

prior:

Object of class "character" ~~

F:

Object of class "matrix" ~~

varF:

Object of class "matrix" ~~

P:

Object of class "numeric" ~~

Z:

Object of class "matrix" ~~

noGroups:

Object of class "numeric" ~~

replics:

Object of class "numeric" ~~

Extends

Class "WfmFit", directly.

Methods

initialize

signature(.Object = "WfmFitTime"): ...

show

signature(object = "WfmFitTime"): ...

Author(s)

Kristof De Beuf <kristof.debeuf@ugent.be>

Examples

showClass("WfmFitTime")

Results

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> library(waveTiling)
Loading required package: oligo
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: oligoClasses
Welcome to oligoClasses version 1.34.0
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
================================================================================
Welcome to oligo version 1.36.1
================================================================================
Loading required package: GenomeGraphs
Loading required package: biomaRt
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/waveTiling/WfmFitTime-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: WfmFitTime-class
> ### Title: Class "WfmFitTime"
> ### Aliases: WfmFitTime-class WfmFitTime show,WfmFitTime-method
> ###   initialize,WfmFitTime-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("WfmFitTime")
Class "WfmFitTime" [package "waveTiling"]

Slots:
                                                                          
Name:           betaWav       varbetaWav        smoothPar           varEps
Class:           matrix           matrix           matrix          numeric
                                                                          
Name:     dataOrigSpace dataWaveletSpace    design.matrix        phenoData
Class:           matrix           matrix           matrix       data.frame
                                                                          
Name:       genome.info         n.levels    probePosition        wave.filt
Class:       GenomeInfo          numeric           vector        character
                                                                          
Name:                Kj            prior                F             varF
Class:          numeric        character           matrix           matrix
                                                                          
Name:                 P                Z         noGroups          replics
Class:          numeric           matrix          numeric          numeric

Extends: "WfmFit"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>