Class "WfmInfCompare"

Description

class to store outputs from the inference for a pairwise comparison wavelet-based transcriptome analysis.

Objects from the Class

Objects can be created by calls of the form new("WfmInfCompare").

Slots

alpha:

Object of class "numeric" ~~

delta:

Object of class "numeric" ~~

two.sided:

Object of class "numeric" ~~

sigProbes:

Object of class "list" ~~

regions:

Object of class "list" ~~

GlocRegions:

Object of class "list" ~~

FDR:

Object of class "matrix" ~~

CI:

Object of class "array" ~~

eff:

Object of class "matrix" ~~

varEff:

Object of class "matrix" ~~

Extends

Class "WfmInf", directly.

Methods

initialize

signature(.Object = "WfmInfCompare"): ...

Author(s)

Kristof De Beuf <kristof.debeuf@ugent.be>

Examples

showClass("WfmInfCompare")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(waveTiling)
Loading required package: oligo
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: oligoClasses
Welcome to oligoClasses version 1.34.0
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
================================================================================
Welcome to oligo version 1.36.1
================================================================================
Loading required package: GenomeGraphs
Loading required package: biomaRt
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/waveTiling/WfmInfCompare-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: WfmInfCompare-class
> ### Title: Class "WfmInfCompare"
> ### Aliases: WfmInfCompare-class WfmInfCompare show,WfmInfCompare-method
> ###   initialize,WfmInfCompare-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("WfmInfCompare")
Class "WfmInfCompare" [package "waveTiling"]

Slots:
                                                                              
Name:        alpha       delta   two.sided   sigProbes     regions GlocRegions
Class:     numeric     numeric     numeric        list        list        list
                                                                  
Name:          FDR          CI         eff      varEff genome.info
Class:      matrix       array      matrix      matrix  GenomeInfo

Extends: "WfmInf"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>