A list of crossover locations (in cM), each component being a
vector of locations for a different meiotic product.
chrlen
Chromosome length (in cM), either of length 1 or the same
length as xoloc.
nu
A vector of interference parameters (nu) at which to
calculate the log likelihood.
p
A vector of parameter values for the proportion of crossovers from
the no interference pathway.
max.conv
Maximum limit for summation in the convolutions to get
inter-crossover distance distribution from the inter-chiasma distance
distributions. This should be greater than the maximum number of chiasmata
on the 4-strand bundle.
integr.tol
Tolerance for convergence of numerical integration.
max.subd
Maximum number of subdivisions in numerical integration.
min.subd
Minimum number of subdivisions in numerical integration.
Details
See Housworth and Stahl (2003) and Broman and Weber (2000) for details of
the method.
If neither nu nor p has length 1, they both must have the same
length. If one has length 1 and the other does not, the one with length 1
is repeated so that they both have the same length.
Value
A vector of log likelihoods.
The corresponding values of nu and p are saved as attributes.