Last data update: 2014.03.03
|
R: Filter network
FilterNetwork | R Documentation |
Filter network
Description
Filter network
Usage
FilterNetwork(net, weight, min.weight = 0.8, min.conn.strength = 0.4,
min.num.conn = 5, max.num.conn = 50, remove.self.connection = TRUE,
debug = FALSE)
Arguments
net |
List, a gene interaction network
|
weight |
The weights of genes, could from the function EstimateExpression
|
min.weight |
Filter the connected genes with weights less than min.weight
|
min.conn.strength |
The minimum gene connection strength
|
min.num.conn |
The minimum number of connections required for a gene to be considered for trans-analysis
|
max.num.conn |
Only keep the top max.conn genes
|
remove.self.connection |
Logical, whether removing self-connections or not
|
debug |
Logical, specifying whether debug information should be printed
|
Value
The filtered network
Examples
data(net)
net.filt = FilterNetwork(net)
Results
|