R: Heatmap showing the connected genes' dysregulation...
PlotRegulationHeatmap
R Documentation
Heatmap showing the connected genes' dysregulation probabilities
Description
Heatmap showing the connected genes' dysregulation probabilities
Usage
PlotRegulationHeatmap(gene, posterior, mut, subtype = NULL,
main = "in_Cancer", ...)
Arguments
gene
A character vector of gene names
posterior
The xseq posteriors, output of InferXseqPosterior
or LearnXseqParameter
mut
A data.frame of mutations. The data.frame should have at least
three columns of characters: sample, hgnc_symbol, and variant_type.
The variant_type column cat be either "HOMD", "HLAMP",
"MISSENSE", "NONSENSE", "FRAMESHIFT", "INFRAME", "SPLICE", "NONSTOP",
"STARTGAINED", "SYNONYMOUS", "OTHER", "FUSION", "COMPLEX".
subtype
A vector representing a character of each patient,
e.g., subtype