Last data update: 2014.03.03

R: TCGA AML SNP6.0 GISTIC copy number alteration calls
cna.callR Documentation

TCGA AML SNP6.0 GISTIC copy number alteration calls

Description

A dataset containing part of the The Cancer Genome Atlas acute myeloid leukemia Affymetrix SNP6.0 array copy number alteration calls from GISTIC

Usage

cna.call

Format

A matrix containing the GISTIC copy number calls of 454 genes in 197 patients:

  • Row names are patient identifiers

  • Colume names are official HGNC gene symbols

Each element of the matrix is coded:

  • -2, homozygous deletions

  • -1, hemizygous deletions

  • 0, neutral

  • 1, gain

  • 2, amplifications

Source

https://www.synapse.org/#!Synapse:syn300013

Results