Yeast genome RNA sequencing data based on Nagalakshmi et. al.

Description

The yeast genome data was retrieved from the sequence read archive, aligned with bwa, and converted to BAM format with samtools.

Details

Index:

yeastNagalakshmi-package

The package contains three files in extdata sub-directory. Two of them are pertained to RNA sequencing data in BAM format, and one is a TranscriptDb object of yeast from transcript annotations available at the UCSC Genome Browser.

Author(s)

Martin Morgan <mtmorgan@fhcrc.org>

Maintainer: Biocore Team c/o BioC user list <bioconductor@stat.math.ethz.ch>

References

Nagalakshmi et. al., The transcriptional landscape of the yeast genome defined by RNA sequencing, Science, 320:1344:1349, June 2008.

Examples

y <- system.file("extdata", package="yeastNagalakshmi")
dir(y)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(yeastNagalakshmi)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/yeastNagalakshmi/yeastNagalakshmi-package.Rd_%03d_medium.png", width=480, height=480)
> ### Name: yeastNagalakshmi-package
> ### Title: Yeast genome RNA sequencing data based on Nagalakshmi et. al.
> ### Aliases: yeastNagalakshmi-package yeastNagalakshmi
> ### Keywords: package
> 
> ### ** Examples
> 
> y <- system.file("extdata", package="yeastNagalakshmi")
> dir(y)
[1] "SRR002051.chrI-V.bam"     "SRR002051.chrI-V.bam.bai"
[3] "sacCer2_sgdGene.sqlite"  
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>