Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 13 found.
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ped.list (Package: RVsharing) : Example pedigrees

List of example pedigree objects
● Data Source: CranContrib
● Keywords:
● Alias: ped.list
● 0 images

GeneDropSim.fn (Package: RVsharing) : Estimation of the probability of sharing of a rare variant by gene dropping in a pedigree

Estimates the probability that all subjects in a set of pedigree members share a rare variant given that it occured in any of them by performing a Monte Carlo simulation of the transmission of the genotypes of the variant from the founders down the pedigree.
● Data Source: CranContrib
● Keywords:
● Alias: GeneDropSim.fn
1 images

get.psubset (Package: RVsharing) : Probability of sharing of rare variants in a subset of families

Computing probability of sharing of rare variants in a subset of families where rare variants are seen based on precomputed family-specific rare variant sharing probabilities.
● Data Source: CranContrib
● Keywords:
● Alias: get.psubset
● 0 images

RVsharingProb-class (Package: RVsharing) : RVsharingProb Class

An object created by RVsharing
● Data Source: CranContrib
● Keywords:
● Alias: RVsharingProb, RVsharingProb-class, class:RVsharingProb
● 0 images

Trio-class (Package: RVsharing) : Trio Class

An object containing a character subject identifier ID, a character identifier of his/her spouse and a list of their offspring.
● Data Source: CranContrib
● Keywords:
● Alias: Trio, Trio-class, class:Trio
● 0 images

GeneDropSimExcessSharing.fn (Package: RVsharing) : Estimation of the probability of sharing of a rare variant by gene dropping in a pedigree

Estimates the probability that all subjects in a subset of pedigree members share a rare variant (RV) given that it occured in any of them by performing a Monte Carlo simulation of the transmission of the genotypes of the variant from the founders down the pedigree.
● Data Source: CranContrib
● Keywords:
● Alias: GeneDropSimExcessSharing.fn
1 images

GeneDrop-method (Package: RVsharing) : Gene Dropping method

Simulate transmission of alleles from the parents to their offsrping according to Mendel's laws.
● Data Source: CranContrib
● Keywords:
● Alias: GeneDrop, GeneDrop,Trio,numeric-method
● 0 images

GeneDropSim.allsubsets.fn (Package: RVsharing) : Estimation of the probability of sharing of a rare variant by gene dropping in a pedigree

Estimates the probabilities of sharing a rare variant for all subsets of a given set of pedigree members given that the rare variant occured in any subject in the set by performing a Monte Carlo simulation of the transmission of the genotypes of the variant from the founders down the pedigree.
● Data Source: CranContrib
● Keywords:
● Alias: GeneDropSim.allsubsets.fn
1 images

RVsharing (Package: RVsharing) : Probability of sharing a rare variant among relatives

Computing probability that a rare variant is shared by a set of subjects in a pedigree using equation (1) of Bureau et al. and a generalization to a subset of subjects.
● Data Source: CranContrib
● Keywords:
● Alias: RVsharing, RVsharing,character,character,character,character-method, RVsharing,character,character,character,missing-method, RVsharing,numeric,numeric,numeric,missing-method, RVsharing,numeric,numeric,numeric,numeric-method, RVsharing,pedigree,missing,missing,character-method, RVsharing,pedigree,missing,missing,missing-method
1 images

ped2trio (Package: RVsharing) : Conversion of a code{pedigree

Creates trio objects representing the pedigree structure contained in the pedigree object.
● Data Source: CranContrib
● Keywords:
● Alias: ped2trio
● 0 images