RVsharing

Package: RVsharing
Type: Package
Title: Probability of Sharing Rare Variants among Relatives
Version: 1.6.0
Date: 2016-06-16
Author: Alexandre Bureau, Ingo Ruczinski, Samuel G. Younkin
Maintainer: Alexandre Bureau <alexandre.bureau@msp.ulaval.ca>
Description: Computes estimates of the probability of related individuals sharing a rare variant.
License: GPL-2
Depends: R (>= 2.15.2)
Imports: utils, methods, kinship2
Suggests:
Enhances:
Collate: AllGenerics.R AllClasses.R methods-pedigree.R methods-trio.R
methods-RVsharingProb.R functions.R approx2_functions.R
ped2trio.R PFU.R RVsharing.fn.R extract_carriers.R
pvalue_functions.R RVgene.R zzz.R
LazyLoad: yes
biocViews:
NeedsCompilation: no
Packaged: 2016-06-16 18:29:17 UTC; alexandrebureau
Repository: CRAN
Date/Publication: 2016-06-17 08:18:27

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RVsharing' ...
** package 'RVsharing' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
in method for 'RVsharing' with signature 'data="pedigree",dad.id="missing",mom.id="missing",carriers="character"': no definition for class "pedigree"
in method for 'RVsharing' with signature 'data="pedigree",dad.id="missing",mom.id="missing",carriers="missing"': no definition for class "pedigree"
** help
*** installing help indices
  converting help for package 'RVsharing'
    finding HTML links ... done
    GeneDrop                                html  
    GeneDropSim.allsubsets.fn               html  
    GeneDropSim.fn                          html  
    GeneDropSimExcessSharing.fn             html  
    RVgene                                  html  
    RVsharing                               html  
    finding level-2 HTML links ... done

    RVsharingProb                           html  
    Trio                                    html  
    compute.kinship.prop.coef               html  
    ex.ped.mat                              html  
    get.psubset                             html  
    ped.list                                html  
    ped2trio                                html  
** building package indices
** testing if installed package can be loaded
* DONE (RVsharing)
Making 'packages.html' ... done