MIMOSA

Package: MIMOSA
Type: Package
Title: Mixture Models for Single-Cell Assays
Version: 1.10.2
Date: 2014-10-01
Author: Greg Finak <gfinak@fhcrc.org>
Maintainer: Greg Finak <gfinak@fhcrc.org>
Description: Modeling count data using Dirichlet-multinomial and beta-binomial
mixtures with applications to single-cell assays.
License: Artistic-2.0
VignetteBuilder: knitr
Imports: methods, Formula, data.table, pracma, MCMCpack, coda, modeest,
testthat, Rcpp, scales, Kmisc
Suggests: parallel, knitr
Depends: R (>= 3.0.2), MASS, plyr, reshape, Biobase, ggplot2
LinkingTo: Rcpp, RcppArmadillo
LazyLoad: yes
LazyData: yes
biocViews: FlowCytometry, CellBasedAssays
NeedsCompilation: yes
Packaged: 2016-05-16 04:19:21 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MIMOSA' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"  `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fpic  -g -O2  -c BetaMix.cpp -o BetaMix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"  `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fpic  -g -O2  -c MCMC.cpp -o MCMC.o
MCMC.cpp: In function 'SEXPREC* fitMCMC(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
MCMC.cpp:264:16: warning: null argument where non-null required (argument 1) [-Wnonnull]
     newll=nan(0);
                ^
MCMC.cpp:348:16: warning: null argument where non-null required (argument 1) [-Wnonnull]
     newll=nan(0);
                ^
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c MIMOSA_init.c -o MIMOSA_init.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c betaintegral.c -o betaintegral.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"  `/home/ddbj/local/lib64/R/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fpic  -g -O2  -c betaintegralRcpp.cpp -o betaintegralRcpp.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o MIMOSA.so BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -O3 -lm -lstdc++ -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/MIMOSA/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'MIMOSA'
** help
*** installing help indices
  converting help for package 'MIMOSA'
    finding HTML links ... done
    BetaMixResult-class                     html  
    ConstructMIMOSAExpressionSet            html  
    ICS                                     html  
    MDMix                                   html  
    MIMOSA-accessors                        html  
    MIMOSA-package                          html  
    MIMOSA                                  html  
    MIMOSAExpressionSet                     html  
    MIMOSAResult-class                      html  
    MIMOSAResult                            html  
    asinh_trans                             html  
    boxplotMIMOSAResultList                 html  
    combine.MIMOSA                          html  
    countsTable                             html  
    fdr                                     html  
    fitMCMC                                 html  
    pData                                   html  
    print                                   html  
    show                                    html  
    volcanoPlot                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MIMOSA)
Making 'packages.html' ... done