getZ
(Package: MIMOSA) :
Extract the posterior probabilities of response from a MIMOSA model
Extract the posterior probabilities of response from a MIMOSA model
● Data Source:
BioConductor
● Keywords:
● Alias: getW, getW.MIMOSAResult, getW.MIMOSAResultList, getZ, getZ.MIMOSAResult, getZ.MIMOSAResultList
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MIMOSA-package
(Package: MIMOSA) :
MIMOSA: Mixture Models for Single Cell Assays
MIMOSA implements mxitures of Dirichlet-multinomial or Beta-binomial models for paired count data from single–cell assays that typically arise in immunological studies. It can be used for ICS (Intracellular Cytokine Staining) assays to detect vaccine responders, for example, or to detect changes in proportions of cells expressing a gene, such as in Fluidigm Biomark Single–cell gene expression.
● Data Source:
BioConductor
● Keywords:
● Alias: MIMOSA-package
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MIMOSA
(Package: MIMOSA) :
Fit a MIMOSA Model
This method fits a MIMOSA model to count data stored in an ExpressionSet object.
● Data Source:
BioConductor
● Keywords:
● Alias: MIMOSA, MIMOSA,formula,ExpressionSet-method
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MIMOSAExpressionSet
(Package: MIMOSA) :
Construct an ExpressionSet for MIMOSA
Starting from a reshaped data frame in the correct format, construct an ExpressionSet object that can be used with MIMOSA.
● Data Source:
BioConductor
● Keywords:
● Alias: MIMOSAExpressionSet
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MIMOSAResult-class
(Package: MIMOSA) :
Stores the result of a MIMOSA fitted model
MIMOSA returns an object of MIMOSAResult irrespective of which method / implementation is used to fit the data.
● Data Source:
BioConductor
● Keywords:
● Alias: MIMOSAResult-class
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MIMOSAResult
(Package: MIMOSA) :
Stores the result of a MIMOSA fitted model
MIMOSA returns an object of MIMOSAResult irrespective of which method / implementation is used to fit the data.
● Data Source:
BioConductor
● Keywords:
● Alias: MIMOSAResult
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Arcsinh transform for ggplot2
● Data Source:
BioConductor
● Keywords:
● Alias: asinh_trans
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Boxplots of MIMOSA
● Data Source:
BioConductor
● Keywords:
● Alias: boxplotMIMOSAResultList
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combine.MIMOSA
(Package: MIMOSA) :
Combine MIMOSAResultList objects
Combine two or more MIMOSAResultList objects
● Data Source:
BioConductor
● Keywords:
● Alias: combine.MIMOSA
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countsTable
(Package: MIMOSA) :
Extract the table of counts from a MIMOSA model
Extract the table of counts from a MIMOSA model
● Data Source:
BioConductor
● Keywords:
● Alias: countsTable, countsTable,MCMCResult-method, countsTable,MDMixResult-method, countsTable,MIMOSAResult-method, countsTable,MIMOSAResultList-method, countsTable.MIMOSAResultList
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