pint

Package: pint
Type: Package
Title: Pairwise INTegration of functional genomics data
Version: 1.22.0
Date: 2014-09-14
Author: Olli-Pekka Huovilainen <ohuovila@gmail.com> and Leo Lahti <leo.lahti@iki.fi>
Maintainer: Olli-Pekka Huovilainen <ohuovila@gmail.com>
Description: Pairwise data integration for functional genomics, including tools for DNA/RNA/miRNA dependency screens.
License: BSD_2_clause + file LICENSE
URL: https://github.com/antagomir/pint
BugReports: https://github.com/antagomir/pint/issues
Collate: AllClasses.R AllGenerics.R GeneDependencyModel-accessors.R
ChromosomeModels-accessors.R GenomeModels-accessors.R
imputation.R show-methods.R plot-methods.R screen.cgh.mrna.R
screen.cgh.mir.R calculate.genome.R calculate.chr.R
calculate.arm.R pick.chr.arm.R fixed.window.R
iterative.window.R z.effects.R W.effects.R
fit.cgh.mrna.byname.R fit.cgh.mir.byname.R report.R
sparse.window.R calculate.arm.sparse.R calculate.chr.sparse.R
calculate.genome.sparse.R pint.data.R pint.match.R firstlib.R
test.segmented.R centerData.R
LazyLoad: yes
Depends: mvtnorm, methods, graphics, Matrix, dmt
biocViews: aCGH, GeneExpression, Genetics, DifferentialExpression,
Microarray
NeedsCompilation: no
Packaged: 2016-05-04 03:26:17 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'pint' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'as.data.frame' from package 'base' in package 'pint'
** help
*** installing help indices
  converting help for package 'pint'
    finding HTML links ... done
    ChromosomeModels-class                  html  
    GeneDependencyModel-class               html  
    finding level-2 HTML links ... done

    GenomeModels-class                      html  
    fit.byname                              html  
    geneCopyNum                             html  
    geneExp                                 html  
    get.neighboring.probes                  html  
    get.neighs                              html  
    join.top.regions                        html  
    order.feature.info                      html  
    pint.data                               html  
    plot                                    html  
    screen                                  html  
    summarize.region.parameters             html  
    window                                  html  
    z.effect                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pint)
Making 'packages.html' ... done