R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Data set

Classification

Results 1 - 10 of 14 found.
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ChromosomeModels-class (Package: pint) : Class "ChromosomeModels"

Collection of dependency models fitting two data sets in particular chromosome.

● Data Source: BioConductor
● Keywords: classes
● Alias: ChromosomeModels-class
● 1 images

GeneDependencyModel-class (Package: pint) : Class "GeneDependencyModel"

A Genomic Dependency model for two data sets

● Data Source: BioConductor
● Keywords: classes
● Alias: GeneDependencyModel-class
● 1 images

GenomeModels-class (Package: pint) : Class "GenomeModels"

Collection of dependency models fitting two data sets in whole genome. The dependency models are in a list of ChromosomeModelss (which represents each chromosome) that have a list of dependency models in that chromosomal arm.

● Data Source: BioConductor
● Keywords: classes
● Alias: GenomeModels-class
● 0 images

fit.byname (Package: pint) : Fit dependency model around one gene between two data sets.

Takes a window from two datasets around chosen gene and fits a selected dependency model between windows.

● Data Source: BioConductor
● Keywords: iteration, math
● Alias: fit.byname, fit.cgh.mir.byname, fit.cgh.mrna.byname
● 0 images

get.neighboring.probes (Package: pint) : Get neighboring probes

Mainly for internal use. Pick neighboring probes for a given probes based on chromosomal locations.

● Data Source: BioConductor
● Keywords: utilities
● Alias: get.neighboring.probes
● 0 images

get.neighs (Package: pint) : get.neighs

Matching function called by the get.neighboring.probes

● Data Source: BioConductor
● Keywords: utilities
● Alias: get.neighs
● 0 images

join.top.regions (Package: pint) : Merge the overlapping top chromosomal regions.

Select the top models that exceed the threshold and merge the overlapping windows. Useful for interpreting the results.

● Data Source: BioConductor
● Keywords: utilities
● Alias: join.top.regions
● 0 images

order.feature.info (Package: pint) : Order the gene information table by chromosomal locations.

Order the gene information table by chromosomal locations. Removes genes with no location information.

● Data Source: BioConductor
● Keywords: utilities
● Alias: order.feature.info
● 0 images

pint.data (Package: pint) :

Forms a data set for use in functions in 'pint' package (e.g. screen.cgh.mrna). Pairs samples in two data sets.

● Data Source: BioConductor
● Keywords:
● Alias: pint.data, pint.match
● 0 images

plot (Package: pint) :

Plot the contribution of the samples and variables to the dependency model or dependency model fitting scores of chromosome or genome.

● Data Source: BioConductor
● Keywords: hplot
● Alias: dependency score plotting, plot.ChromosomeModels, plot.GeneDependencyModel, plot.GenomeModels
● 2 images