ArrayExpress
(Package: ArrayExpress) :
R objects from ArrayExpress database
ArrayExpress produces an AffyBatch, an ExpressionSet or a NChannelSet from a raw dataset from the ArrayExpress database. ArrayExpress needs an Internet connection.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ArrayExpress
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ae2bioc
(Package: ArrayExpress) :
Convert MAGE-TAB files from raw data into a Bioconductor object
ae2bioc converts local MAGE-TAB files into a AffyBatch, an ExpressionSet or a NChannelSet.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ae2bioc
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extract.zip
(Package: ArrayExpress) :
Unzip archives in a specified directory
extract.zip extracts the files from a .zip archive in a specific directory.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: extract.zip
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getAE
(Package: ArrayExpress) :
Download MAGE-TAB files from ArrayExpress in a specified directory
getAE downloads and extracts the MAGE-TAB files from an ArrayExpress dataset.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: getAE
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getcolproc
(Package: ArrayExpress) :
Return the possible column names from processed MAGE-TAB files
getcolproc extracts the column names from processed MAGE-TAB and return them. The output is needed to call the function procset.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: getcolproc
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getcolraw
(Package: ArrayExpress) :
Return the possible column names from raw MAGE-TAB files
getcolraw extracts the column names from raw MAGE-TAB and return them. The output can be use to set the argument 'rawcol' of the function magetab2bioc.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: getcolraw
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procset
(Package: ArrayExpress) :
Convert processed MAGE-TAB files into a Bioconductor object
procset converts local MAGE-TAB files into an ExpressionSet.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: procset
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queryAE
(Package: ArrayExpress) :
XML query of the ArrayExpress repository
queryAE queries the ArrayExpress database with keywords and give a dataframe with ArrayExpress identifiers and related information, as an output.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: queryAE
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