R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 7 of 7 found.
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CNOlistDREAM (Package: CellNOptR) : Data used for the DREAM3 challenge

This data object contains the DREAM data used in the package vignette, already loaded and formatted as a CNOlist object. This is to be used with the model "DreamModel". This is a data collected on HepG2 cells cultivated with or without stimulation of tgfa, ilk, mek12, pi3k and p38, in combination with inhibition of igf1 and/or il1a. Seven phosphoproteins are measured using Luminex xMAP assays: akt, erk12, ikb, jnk12, p38, hsp27 and mek12.

● Data Source: BioConductor
● Keywords: datasets
● Alias: CNOlistDREAM
● 0 images

CNOlistToy (Package: CellNOptR) : Toy data

This data object contains the data associated with the Toy Model example from the package vignette, already loaded and formatted as a CNOlist object.

● Data Source: BioConductor
● Keywords: datasets
● Alias: CNOlistToy
● 0 images

CNOlistToy2 (Package: CellNOptR) : Toy data with 2 time points

This data object contains the data associated with the Toy Model example from the package vignette, already loaded and formatted as a CNOlist object, and modified to contain 2 time points. The second time point is such a way that all of the signals stay as in time 1, except for cJun and Jnk which go to zero.

● Data Source: BioConductor
● Keywords: datasets
● Alias: CNOlistToy2
● 0 images

CNOlistToyMMB (Package: CellNOptR) : Toy data

This data object contains the data associated with the Toy Model example from the package vignette, already loaded and formatted as a CNOlist object.

● Data Source: BioConductor
● Keywords: datasets, internal
● Alias: CNOlistToyMMB
● 0 images

LiverDREAM (Package: CellNOptR) : Model used for the DREAM3 challenge

This data object contains the model used in the package vignette, already loaded and formatted as a Model object. This is to be used with the data in "CNOListDREAM"

● Data Source: BioConductor
● Keywords: datasets
● Alias: DreamModel
● 0 images

ToyModel (Package: CellNOptR) : Toy model

This data object contains the Toy model from the package vignette, already loaded and formatted as a Model object.

● Data Source: BioConductor
● Keywords: datasets
● Alias: ToyModel
● 0 images

ToyModel2 (Package: CellNOptR) : Toy model

This data object contains the Toy model from the package vignette, already loaded and formatted as a Model object, and modified for the 2 time points version (a negative fedback between cJun and Jnk (!cJun=Jnk) is added).

● Data Source: BioConductor
● Keywords: datasets
● Alias: ToyModel2
● 0 images