List of possible factor values the GEO data sets can have.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: GEOfactorvalues
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Maps the annotation of Affymetrix platforms from the affy [1] package to the annotation names in BioMaRt [2]
● Data Source:
BioConductor
● Keywords: datasets
● Alias: annotationlist
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Data frame containing information for generating the Cytoscape SIF file. Contains the connections between the affinity propagation clustering of the disease profiles.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: cytodisease
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Containing the names of the disease profiles and the numbers of the clusters for each node, as determined by affinity propagation clustering using GSEA scores for similarity matrix.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: diseaseClusters
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Ranked Lists by expression of genes for reference set of disease profiles.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: diseaseRL
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Data frame containing the names of the experiments in the disease clusters, with the corresponding search terms to use in the MeSH browser through NCBI.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: diseaselabels
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List of HUGO genes included in the reference data sets.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: genelist
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