R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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srdta (Package: GenABEL.data) : GWA-type data on small region

srdta contains gwaa.data object with results on a small region of about 2.5 Mb. 833 SNPs are typed on 2500 people. NA rate is 95%. Sex, age, two quantitative (qt1 and qt2) and one binary (bt) traits are available for analysis. Run demo(srdta) and check tut-srdta.pdf to see examples of work with this data set. Original data files used for this set are located at YOUR_R_LIB_LOCATION/exdata/srphenos.dat (phenotypes), srgenos.dat (human-readable genotypes) and srgenos.raw (genotypes in internal format)

● Data Source: CranContrib
● Keywords: datasets
● Alias: srdta
● 0 images

ge03d2 (Package: GenABEL.data) : GWA-type data on few small region

ge03d2 A small data set (approximately 1,000 people and 8,000 SNPs) containing data on 3 autosomes and X chromsome. Is a good set for demonatration of the QC procedures (different genotyping errors are introduced) and GWA analysis. Run demo(ge03d2) to see a demo. This data set was developed for the "Advances in population- based studies" (Ge03) course of the Nihes.

● Data Source: CranContrib
● Keywords: datasets
● Alias: ge03d2, ge03d2.clean, ge03d2c, ge03d2ex, ge03d2ex.clean, pop2.ids, qc.nostr, qc.str
● 0 images