Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 3 of 3 found.
[1] < 1 > [1]  Sort:

TMT6 (Package: MSnbase) : TMT 6-plex set

This instance of class "ReporterIons" corresponds to the TMT 6-plex set, i.e the 126, 127, 128, 129, 130 and 131 isobaric tags. In the TMT7 data set, an unfragmented tag, i.e reporter and attached isobaric tag, is also included at MZ 229. The TMT10 instance corresponds to the 10-plex version.
● Data Source: BioConductor
● Keywords: datasets
● Alias: TMT10, TMT6, TMT7
● 0 images

iTRAQ4 (Package: MSnbase) : iTRAQ 4-plex set

This instance of class "ReporterIons" corresponds to the iTRAQ 4-plex set, i.e the 114, 115, 116 and 117 isobaric tags. In the iTRAQ5 data set, an unfragmented tag, i.e reporter and attached isobaric tag, is also included at MZ 145. These objects are used to plot the reporter ions of interest in an MSMS spectra (see "Spectrum2") as well as for quantification (see quantify).
● Data Source: BioConductor
● Keywords: datasets
● Alias: iTRAQ4, iTRAQ5, iTRAQ8, iTRAQ9
● 0 images

itraqdata (Package: MSnbase) :

itraqdata is and example data sets is an iTRAQ 4-plex experiment that has been run on an Orbitrap Velos instrument. It includes identification data in the feature data slot obtain from the Mascot search engine. It is a subset of an spike-in experiment where proteins have spiked in an Erwinia background, as described in
● Data Source: BioConductor
● Keywords: datasets
● Alias: itraqdata
● 0 images