|
Contains annotations for 93 samples of Carbayo data.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: annotCarbayo
●
0 images
|
dataCarbayo
(Package: MineICA) :
Carbayo expression data
Contains bladder cancer expression data based on on HG-U133A Affymetrix microarrays. The data include 93 samples, were normalized with MAS5 by the authors of the paper using Quantile normalization and log2-transformation. They are restricted to the 10000 most variable probe sets.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: dataCarbayo
●
0 images
|
hgOver
(Package: MineICA) :
Output of code{hyperGtest
Example of output of function hyperGtest.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: hgOver
●
0 images
|
icaSetCarbayo
(Package: MineICA) :
IcaSet-object containing a FastICA decomposition of gene expression microarrray-based data of bladder cancer samples.
Object of class IcaSet containing an ICA decomposition calculated by the FastICA algorithm (through matlab function "icasso") on bladder cancer expression data measured on HG-U133A Affymetrix microarrays. The original expression data were normalized with MAS5 by the authors of the paper followed by log2-transformation. ICA was run on the dataset restricted to the 10000 most variable probe sets (based on IQR values). 10 components were computed. Only probe sets/genes having an absolute projection higher than 3 are stored in this object.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: icaSetCarbayo
●
0 images
|
icaSetKim
(Package: MineICA) :
IcaSet-object containing a FastICA decomposition of gene expression microarrray-based data of bladder cancer samples.
Object of class IcaSet containing an ICA decomposition calculated by the FastICA algorithm (through matlab function "icasso") on bladder cancer expression data measured on illumina Human-6 BeadChip, version 2. It contains 20 independent components. The original expression data contain 165 tumor samples, were normalized by the authors of the paper with Illumina BeadStudio software using Quantile normalization and log2 transformation, and are restricted to the 10000 most variable probe sets.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: icaSetKim
●
0 images
|
icaSetRiester
(Package: MineICA) :
IcaSet-object containing a FastICA decomposition of gene expression microarrray-based data of bladder cancer samples.
Object of class IcaSet containing an ICA decomposition calculated by the FastICA algorithm (through matlab function "icasso") on gene expression data of urothelial tumors. measured on a HG-U133-plus2 Affymetrix microarrays. It contains 20 independent components. The original expression data contain 93 tumor samples, were normalized with GCRMA with log2-transformation, and are restricted to the 10000 most variable probe sets.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: icaSetRiester
●
0 images
|
icaSetStransky
(Package: MineICA) :
IcaSet-object containing a FastICA decomposition of gene expression microarrray-based data of bladder cancer samples.
Object of class IcaSet containing an ICA decomposition calculated by the FastICA algorithm (through matlab function "icasso") on bladder cancer expression data measured on HG-U133-95a and HG-U133-95av2 Affymetrix microarrays. It contains 20 independent components. The original expression data contain 63 tumor samples and were normalized by RMA with log2-transformation.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: icaSetStransky
●
0 images
|
providing 
.