CNV
(Package: RTCGA.CNV) :
CNV datasets from TCGA project
Package provides CNV datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA") Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving+Data+Using+the+Data+Matrix Converting RTCGA.CNV datasets from data.frames to Bioconductor classes is explained here convertTCGA.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ACC.CNV, ACC.CNV,BLCA.CNV,BRCA.CNV,CESC.CNV,CHOL.CNV,COAD.CNV,COADREAD.CNV,DLBC.CNV,ESCA.CNV,GBM.CNV,GBMLGG.CNV,HNSC.CNV,KICH.CNV,KIPAN.CNV,KIRC.CNV,KIRP.CNV,LAML.CNV,LGG.CNV,LIHC.CNV,LUAD.CNV,LUSC.CNV,MESO.CNV,OV.CNV,PAAD.CNV,PCPG.CNV,PRAD.CNV,READ.CNV,SARC.CNV,SKCM.CNV,STAD.CNV,TGCT.CNV,THCA.CNV,THYM.CNV,UCEC.CNV,UCS.CNV,UVM.CNV, BLCA.CNV, BRCA.CNV, CESC.CNV, CHOL.CNV, CNV, COAD.CNV, COADREAD.CNV, DLBC.CNV, ESCA.CNV, GBM.CNV, GBMLGG.CNV, HNSC.CNV, KICH.CNV, KIPAN.CNV, KIRC.CNV, KIRP.CNV, LAML.CNV, LGG.CNV, LIHC.CNV, LUAD.CNV, LUSC.CNV, MESO.CNV, OV.CNV, PAAD.CNV, PCPG.CNV, PRAD.CNV, READ.CNV, SARC.CNV, SKCM.CNV, STAD.CNV, STES.CNV, TGCT.CNV, THCA.CNV, THYM.CNV, UCEC.CNV, UCS.CNV, UVM.CNV
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