miRNASeq
(Package: RTCGA.miRNASeq) :
miRNASeq datasets from TCGA project
Package provides miRNASeq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA"). miRNASeq data format is explained here https://wiki.nci.nih.gov/display/TCGA/miRNASeq#miRNASeq-DataOverview. There is one extra column "machine" in each dataset which describes a machine that produced dataset. It can be: Illumina Genome Analyzer, Illumina HiSeq 2000 or both. Converting RTCGA.miRNASeq datasets from data.frames to Bioconductor classes is explained here convertTCGA.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ACC.miRNASeq, ACC.miRNASeq,BLCA.miRNASeq,BRCA.miRNASeq,CESC.miRNASeq,CHOL.miRNASeq,COAD.miRNASeq,COADREAD.miRNASeq,DLBC.miRNASeq,ESCA.miRNASeq,FPPP.miRNASeq,GBM.miRNASeq,GBMLGG.miRNASeq,HNSC.miRNASeq,KICH.miRNASeq,KIPAN.miRNASeq,KIRC.miRNASeq,KIRP.miRNASeq,LAML.miRNASeq,LGG.miRNASeq,LIHC.miRNASeq,LUAD.miRNASeq,LUSC.miRNASeq,MESO.miRNASeq,OV.miRNASeq,PAAD.miRNASeq,PCPG.miRNASeq,PRAD.miRNASeq,READ.miRNASeq,SARC.miRNASeq,SKCM.miRNASeq,STAD.miRNASeq,STES.miRNASeq,TGCT.miRNASeq,THCA.miRNASeq,THYM.miRNASeq,UCEC.miRNASeq,UCS.miRNASeq,UVM.miRNASeq, BLCA.miRNASeq, BRCA.miRNASeq, CESC.miRNASeq, CHOL.miRNASeq, COAD.miRNASeq, COADREAD.miRNASeq, DLBC.miRNASeq, ESCA.miRNASeq, FPPP.miRNASeq, GBM.miRNASeq, GBMLGG.miRNASeq, HNSC.miRNASeq, KICH.miRNASeq, KIPAN.miRNASeq, KIRC.miRNASeq, KIRP.miRNASeq, LAML.miRNASeq, LGG.miRNASeq, LIHC.miRNASeq, LUAD.miRNASeq, LUSC.miRNASeq, MESO.miRNASeq, OV.miRNASeq, PAAD.miRNASeq, PCPG.miRNASeq, PRAD.miRNASeq, READ.miRNASeq, SARC.miRNASeq, SKCM.miRNASeq, STAD.miRNASeq, STES.miRNASeq, TGCT.miRNASeq, THCA.miRNASeq, THYM.miRNASeq, UCEC.miRNASeq, UCS.miRNASeq, UVM.miRNASeq, miRNASeq
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