mutations
(Package: RTCGA.mutations) :
Mutations datasets from TCGA project
Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA") Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ACC.mutations, ACC.mutations,BLCA.mutations,BRCA.mutations,CESC.mutations,CHOL.mutations,COAD.mutations,COADREAD.mutations,DLBC.mutations,ESCA.mutations,GBMLGG.mutations,GBM.mutations,HNSC.mutations,KICH.mutations,KIPAN.mutations,KIRC.mutations,KIRP.mutations,LAML.mutations,LGG.mutations,LIHC.mutations,LUAD.mutations,LUSC.mutations,OV.mutations,PAAD.mutations,PCPG.mutations,PRAD.mutations,READ.mutations,SARC.mutations,SKCM.mutations,STAD.mutations,STES.mutations,TGCT.mutations,THCA.mutations,UCEC.mutations,UCS.mutations,UVM.mutations, BLCA.mutations, BRCA.mutations, CESC.mutations, CHOL.mutations, COAD.mutations, COADREAD.mutations, DLBC.mutations, ESCA.mutations, GBM.mutations, GBMLGG.mutations, HNSC.mutations, KICH.mutations, KIPAN.mutations, KIRC.mutations, KIRP.mutations, LAML.mutations, LGG.mutations, LIHC.mutations, LUAD.mutations, LUSC.mutations, OV.mutations, PAAD.mutations, PCPG.mutations, PRAD.mutations, READ.mutations, SARC.mutations, SKCM.mutations, STAD.mutations, STES.mutations, TGCT.mutations, THCA.mutations, UCEC.mutations, UCS.mutations, UVM.mutations, mutations
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