rnaseq
(Package: RTCGA.rnaseq) :
rnaseq datasets from TCGA project
rnaseq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Package provides rnaseq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA family can be found here: browseVignettes("RTCGA"). Data source is illumina hiseq Level 3 RSEM normalized expression data. Converting RTCGA.rnaseq datasets from data.frames to Bioconductor classes is explained here convertTCGA.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: ACC.rnaseq, ACC.rnaseq,BLCA.rnaseq,BRCA.rnaseq,CESC.rnaseq,CHOL.rnaseq,COAD.rnaseq,COADREAD.rnaseq,DLBC.rnaseq,ESCA.rnaseq,GBMLGG.rnaseq,GBM.rnaseq,HNSC.rnaseq,KICH.rnaseq,KIPAN.rnaseq,KIRC.rnaseq,KIRP.rnaseq,LAML.rnaseq,LGG.rnaseq,LIHC.rnaseq,LUAD.rnaseq,LUSC.rnaseq,OV.rnaseq,PAAD.rnaseq,PCPG.rnaseq,PRAD.rnaseq,READ.rnaseq,SARC.rnaseq,SKCM.rnaseq,STAD.rnaseq,STES.rnaseq,TGCT.rnaseq,THCA.rnaseq,THYM.rnaseq,UCEC.rnaseq,UCS.rnaseq,UVM.rnaseq, BLCA.rnaseq, BRCA.rnaseq, CESC.rnaseq, CHOL.rnaseq, COAD.rnaseq, COADREAD.rnaseq, DLBC.rnaseq, ESCA.rnaseq, GBM.rnaseq, GBMLGG.rnaseq, HNSC.rnaseq, KICH.rnaseq, KIPAN.rnaseq, KIRC.rnaseq, KIRP.rnaseq, LAML.rnaseq, LGG.rnaseq, LIHC.rnaseq, LUAD.rnaseq, LUSC.rnaseq, OV.rnaseq, PAAD.rnaseq, PCPG.rnaseq, PRAD.rnaseq, READ.rnaseq, SARC.rnaseq, SKCM.rnaseq, STAD.rnaseq, STES.rnaseq, TGCT.rnaseq, THCA.rnaseq, THYM.rnaseq, UCEC.rnaseq, UCS.rnaseq, UVM.rnaseq, rnaseq
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