codonDataCtrl
(Package: RiboProfiling) :
Codon frequency and coverage in ORFs on chromosome 1, for dataset ctrlGAlignments
A list of 2 data.frame objects: one with the number of times each codon type is found in each ORF and one with the number of reads for each codon type in each ORF.
codonIndexCovCtrl
(Package: RiboProfiling) :
The read coverage for each codon in ORFs on chromosome 1, for dataset ctrlGAlignments
A list containing the number of reads for each codon in each ORF. Codons are reported on their index in the ORF and no information is available about their type/sequence.
ctrlGAlignments
(Package: RiboProfiling) :
Ribosome profiling data on chr1 in human primary BJ fibroblasts control data: PMID: 23594524.
A dataset containing the alignment information on chromosome 1 from the control BAM. The data object is a GAlignments object containing 3,504,859 hg19 mapped reads.