DEscore and DSscore are pre-calculated DE and DS scores, respectively; DEscore.perm and DSscore.perm are pre-calculated DE and DS scores on the permutation data sets, respectively; They are used in examples of the SeqGSEA package. Note that these scores are of no meaning but to demonstrate the usage of functions.
An exemplified SeqGeneSet object to demonstrate functions in the SeqGSEA package. This object was generated with collection #6 (C6) gene sets of the Molecular Signatures Database (MSigDB) v3.1.
An exemplified ReadCountSet object to demonstrate functions in the SeqGSEA package. This object is comprised of 20 samples across 5,000 exons, a part of the prostate cancer RNA-Seq data set from Kannan et al (2011). Please note that the count data in this example object is incomplete.
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