This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Brian Modena (a member of Daniel R Salomon's lab at Scripps Research Institute), and colleagues. It is used with userListEnrichment to search user-defined gene lists for enrichment.
This matrix gives a predefined set of genes related to several stem cell (SC) types, as reported in two previously-published studies. It is used with userListEnrichment to search user-defined gene lists for enrichment.
This matrix gives a predefined set of marker genes for many regions of the human brain, using data from the Allen Human Brain Atlas (http://human.brain-map.org/) as reported in: Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, et al. (2012) An Anatomically Comprehensive Atlas of the Adult Human Brain Transcriptome. Nature (in press). It is used with userListEnrichment to search user-defined gene lists for enrichment.
BrainLists
(Package: WGCNA) :
Brain-Related Categories with Corresponding Gene Markers
This matrix gives a predefined set of marker genes for many brain-related categories (ie., cell type, organelle, changes with disease, etc.), as reported in several previously-published studies. It is used with userListEnrichment to search user-defined gene lists for enrichment.
This matrix gives a predefined set of marker genes for many blood cell types, as reported in several previously-published studies. It is used with userListEnrichment to search user-defined gene lists for enrichment.
PWLists
(Package: WGCNA) :
Pathways with Corresponding Gene Markers - Compiled by Mike Palazzolo and Jim Wang from CHDI
This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Mike Palazzolo and Jim Wang from CHDI, and colleagues. It is used with userListEnrichment to search user-defined gene lists for enrichment.
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