hr1420
(Package: gap) :
An example data for Manhattan plot with annotation
This example contains p values for a list of SNPs wtih information on chromosome, position and gene symnol.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: hr1420
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hla
(Package: gap) :
The HLA data
This data set contains HLA markers DRB, DQA, DQB and phenotypes of 271 Schizophrenia patients (y=1) and controls (y=0). Genotypes for 3 HLA loci have prefixes name (e.g., "DQB") and a suffix for each of two alleles (".a1" and ".a2").
● Data Source:
CranContrib
● Keywords: datasets
● Alias: hla
●
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mao
(Package: gap) :
A study of Parkinson's disease and MAO gene
The markers are both with actual allele sizes and allele numbers. The dataset is distributed with the GENECOUNTING version 2.0 illustrating gene counting method involving chromosome X. A total of 183 patients and 157 controls (150 males, 190 females) were available, together with five markers in MAOA (monoamine oxidase A) region with alleles 12, 9, 6, 5, 3, and the first three markers were genotyped in all individuals while the fourth and fifth were genotyped for 294 and 304 individuals.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: mao
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fa
(Package: gap) :
Friedreich Ataxia data
This data set contains a case-control indicator and twelve microsatellite markers. An extra unphased individual with the following genotype
● Data Source:
CranContrib
● Keywords: datasets
● Alias: fa
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crohn
(Package: gap) :
Crohn's disease data
The data set consist of 103 common (>5% minor allele frequency) SNPs genotyped in 129 trios from an European-derived population. These SNPs are in a 500-kb region on human chromosome 5q31 implicated as containing a genetic risk factor for Crohn disease.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: crohn
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apoeapoc
(Package: gap) :
APOE/APOC1 markers and Alzheimer's
This data set contains APOE/APOC1 markers and Chinese Alzheimer's patients and controls. Variable id is subject id and y takes value 0 for controls and 2 for Alzheimer's.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: apoeapoc
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mfblong
(Package: gap) :
Example data for ACEnucfam
This is the companion data for ACEnucfam.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: mfblong
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l51
(Package: gap) :
An example pedigree data
The data contains data on 51 individuals in a pedigree. Below it is used for comparing results from various packages.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: l51
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lukas
(Package: gap) :
An example pedigree
A multi-generational pedigree containing individual, father, mother IDs and sex.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: lukas
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aldh2
(Package: gap) :
ALDH2 markers and Alcoholism
This data set contains eight ALDH2 markers and Japanese alcohlic patients (y=1) and controls (y=0). There are genotypes for 8 loci, with a prefix name (e.g., "EXON12") and a suffix for each of two alleles (".a1" and ".a2").
● Data Source:
CranContrib
● Keywords: datasets
● Alias: aldh2
●
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