Last data update: 2014.03.03

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hom.Hs.inp.db (Package: hom.Hs.inp.db) : Bioconductor annotation data package

Welcome to the hom.Hs.inp.db annotation Package. The purpose of this package is to provide detailed information about the hom.Hs.inp platform. Bioconductor attempts to update this package biannually with the most recently available inparanoid data, but inparanoid data sources have not historically updated that frequently. Please check inparanoid to learn more about when they have last updated their databases.
● Data Source: BioConductor
● Keywords: datasets
● Alias: hom.Hs.inp, hom.Hs.inp.db
● 0 images

hom.Hs.inpMAPCOUNTS (Package: hom.Hs.inp.db) : Number of mapped keys for the maps in package hom.Hs.inp.db

hom.Hs.inpMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package hom.Hs.inp.db.
● Data Source: BioConductor
● Keywords: datasets
● Alias: hom.Hs.inpMAPCOUNTS
● 0 images

hom.Hs.inpORGANISM (Package: hom.Hs.inp.db) : The Organism for hom.Hs.inp

hom.Hs.inpORGANISM is an R object that contains a single item: a character string that names the organism for which hom.Hs.inp was built.
● Data Source: BioConductor
● Keywords: datasets
● Alias: hom.Hs.inpORGANISM
● 0 images

hom.Hs.inpHOMSA (Package: hom.Hs.inp.db) : Map between IDs for genes in one organism to their predicted

A map of this type is an R object that provides mappings between identifiers for genes in the package organism and their predicted paralogs in the map that the organism is named after. So for example, if the inparanoid package is the human package, then the hom.Hs.inpRATNO map would provide mappings between human and rat.
● Data Source: BioConductor
● Keywords: datasets
● Alias: hom.Hs.inpACYPI, hom.Hs.inpAEDAE, hom.Hs.inpANOGA, hom.Hs.inpAPIME, hom.Hs.inpARATH, hom.Hs.inpASPFU, hom.Hs.inpBATDE, hom.Hs.inpBOMMO, hom.Hs.inpBOSTA, hom.Hs.inpBRAFL, hom.Hs.inpBRUMA, hom.Hs.inpCAEBR, hom.Hs.inpCAEBRE, hom.Hs.inpCAEEL, hom.Hs.inpCAEJA, hom.Hs.inpCAERE, hom.Hs.inpCANAL, hom.Hs.inpCANFA, hom.Hs.inpCANGL, hom.Hs.inpCAPSP, hom.Hs.inpCAVPO, hom.Hs.inpCHLRE, hom.Hs.inpCIOIN, hom.Hs.inpCIOSA, hom.Hs.inpCOCIM, hom.Hs.inpCOPCI, hom.Hs.inpCRYHO, hom.Hs.inpCRYNE, hom.Hs.inpCRYPA, hom.Hs.inpCULPI, hom.Hs.inpCYAME, hom.Hs.inpDANRE, hom.Hs.inpDAPPU, hom.Hs.inpDEBHA, hom.Hs.inpDICDI, hom.Hs.inpDROAN, hom.Hs.inpDROGR, hom.Hs.inpDROME, hom.Hs.inpDROMO, hom.Hs.inpDROPS, hom.Hs.inpDROVI, hom.Hs.inpDROWI, hom.Hs.inpENTHI, hom.Hs.inpEQUCA, hom.Hs.inpESCCO, hom.Hs.inpFUSGR, hom.Hs.inpGALGA, hom.Hs.inpGASAC, hom.Hs.inpGIALA, hom.Hs.inpHELRO, hom.Hs.inpHOMSA, hom.Hs.inpIXOSC, hom.Hs.inpKLULA, hom.Hs.inpLEIMA, hom.Hs.inpLOTGI, hom.Hs.inpMACMU, hom.Hs.inpMAGGR, hom.Hs.inpMONBR, hom.Hs.inpMONDO, hom.Hs.inpMUSMU, hom.Hs.inpNASVI, hom.Hs.inpNEMVE, hom.Hs.inpNEUCR, hom.Hs.inpORNAN, hom.Hs.inpORYLA, hom.Hs.inpORYSA, hom.Hs.inpOSTTA, hom.Hs.inpPANTR, hom.Hs.inpPEDPA, hom.Hs.inpPHYPA, hom.Hs.inpPHYRA, hom.Hs.inpPHYSO, hom.Hs.inpPLAFA, hom.Hs.inpPLAVI, hom.Hs.inpPONPY, hom.Hs.inpPOPTR, hom.Hs.inpPRIPA, hom.Hs.inpPUCGR, hom.Hs.inpRATNO, hom.Hs.inpRHIOR, hom.Hs.inpSACCE, hom.Hs.inpSCHMA, hom.Hs.inpSCHPO, hom.Hs.inpSCLSC, hom.Hs.inpSORBI, hom.Hs.inpSTANO, hom.Hs.inpSTRPU, hom.Hs.inpTAKRU, hom.Hs.inpTETNI, hom.Hs.inpTETTH, hom.Hs.inpTHAPS, hom.Hs.inpTHEAN, hom.Hs.inpTHEPA, hom.Hs.inpTRIAD, hom.Hs.inpTRICA, hom.Hs.inpTRIVA, hom.Hs.inpTRYCR, hom.Hs.inpUSTMA, hom.Hs.inpXENTR, hom.Hs.inpYARLI
● 0 images

hom.Hs.inp_dbconn (Package: hom.Hs.inp.db) : Collect information about the package annotation DB

Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source: BioConductor
● Keywords: datasets, utilities
● Alias: hom.Hs.inp_dbInfo, hom.Hs.inp_dbconn, hom.Hs.inp_dbfile, hom.Hs.inp_dbschema
● 0 images