AdmixDom
(Package: introgress) :
Admixed Population Dominant Genotype Data from Simulation 1
This data set contains genotypes for a simulated admixed population. The simulated admixed populations conisted of 500 diploid hermaphroditic individuals with ten pairs of chromosomes, each one Morgan in length. The admixed population resulted from an intitial hybridization event between two parental populations (combined in equal proportions) and mating within the admixed population continued for five additional generations. Fitness of hybrids was determined based on a marker at the center of chromosome 1; individuals homozygous at this location had a fitness of 1, while heterozygotes had of fitness of 0.1. Two hundred admixed individuals were sampled at the completion of the simulation and scored for 110 dominant markers spaced evenly across all 10 linkage groups (at 10 cM intervals). Alleles inherited from parental population 1 were treated as the dominant alleles.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: AdmixDom
●
0 images
|
LociD
(Package: introgress) :
Dominant Marker Information for Simulation 1
This data object provides the marker information associated with AdmixDom. Rows correspond to markers (110 markers spaced evenly across 10 linkage groups at 10 cM intervals). The first column gives the locus name, (c1.f is the marker at the location of the genomic region that determined each indvidual's fitness, see AdmixDom). The second column (type) indicates that all of the markers are dominant (D). The third and fourth columns specify each markers linkage group (between 1 and 10) and relative location on each linkage group, respectively.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: LociD
●
0 images
|
p2D
(Package: introgress) :
Parental Population 2 Dominant Genotype Data from Simulation 1
This data set contains genotype data for parental population 2 associated with AdmixDom. This data set consists of 110 dominant markers scored for 10 individuals. All individuals were given a genotype of 0, meaning that they are homozygous for the recessive allele at each marker.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: p2D
●
0 images
|
p1D
(Package: introgress) :
Parental Population 1 Dominant Genotype Data from Simulation 1
This data set contains genotype data for parental population 1 associated with AdmixDom. This data set consists of 110 dominant markers scored for 10 individuals. All individuals were given a genotype of 1, meaning they possessed the dominant allele at each marker.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: p1D
●
0 images
|
AdmixDataSim2
(Package: introgress) :
Admixed Population Genotype Data from Simulation 2
This data set contains genotypes for a simulated admixed population. The admixed population consists of 100 individuals scored for 90 co-dominant markers and 10 dominant markers. Admixed individuals were simulated by sampling genotypes from parental populations (p1DataSim2 and p2DataSim2). The first and second rows of this matrix data object give population and individual identifications for each admixed individual. The following rows contain the genotype data; rows correspond to markers and columns correspond to individuals.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: AdmixDataSim2
●
0 images
|
LociDataSim1
(Package: introgress) :
Marker Information for Simulation 1
This data object provides the marker information associated with AdmixSimData1. Rows correspond to markers (110 markers spaced evenly across 10 linkage groups at 10 cM intervals). The first column gives the locus name, (c1.f is the marker at the location of the genomic region that determined each indvidual's fitness, see AdmixSimData1). The second column (type) indicates that all of the markers are co-dominant (C). The third and fourth columns specify each markers linkage group (between 1 and 10) and relative location on each linkage group, respectively.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: LociDataSim1
●
0 images
|
p1DataSim2
(Package: introgress) :
Parental Population 1 Dominant Genotype Data from Simulation 2
This data set contains genotype data for parental population 1 associated with AdmixDataSim2. This data set consists of 90 co-dominant and 10 dominant markers scored for 50 individuals. The 220 allele occurs at a high frequency for the 90 co-dominant markers in this population, as does the 1 allele (phenotype) for the 10 dominant markers.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: p1DataSim2
●
0 images
|
p2DataSim2
(Package: introgress) :
Parental Population 2 Genotype Data from Simulation 2
This data set contains genotype data for parental population 2 associated with AdmixDataSim2. This data set consists of 90 co-dominant and 10 dominant markers scored for 50 individuals. The 224 and 230 alleles occurs at high frequency for the 90 co-dominant markers in this population, as does the 0 (recessive) allele for the 10 dominant markers.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: p2DataSim2
●
0 images
|
LociDataSim2
(Package: introgress) :
Marker Information for Simulation 2
This data object provides the marker information associated with AdmixDataSim2. Rows correspond to markers (100 markers total). The first column gives the locus name and the second column gives the locus type; co-dominant (C) for the first 90 markers, dominant (D) for the last 10 markers. Map information is not provided for these markers.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: LociDataSim2
●
0 images
|
AdmixDataSim1
(Package: introgress) :
Admixed Population Genotype Data from Simulation 1
This data set contains genotypes for a simulated admixed population. The simulated admixed population consisted of 500 diploid hermaphroditic individuals with ten pairs of chromosomes, each one Morgan in length. The admixed population resulted from an intitial hybridization event between two parental populations (combined in equal proportions) and mating within the admixed population continued for five additional generations. Fitness of hybrids was determined based on a marker at the center of chromosome 1; individuals homozygous at this location had a fitness of 1, while heterozygotes had of fitness of 0.1. Two hundred admixed individuals were sampled at the completion of the simulation and scored for 110 co-dominant markers spaced evenly across all 10 linkage groups (at 10 cM intervals).
● Data Source:
CranContrib
● Keywords: datasets
● Alias: AdmixDataSim1
●
0 images
|
providing 
.