org.Sc.sgdALIAS
(Package: org.Sc.sgd.db) :
Map Open Reading Frame (ORF) Identifiers to Alias Gene Names
A set of gene names may have been used to report yeast genes represented by ORF identifiers. One of these names is chosen to be the primary gene name, and the others are considered aliases. This R object provides mappings between the primary name and aliases.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdALIAS, org.Sc.sgdALIAS2ORF
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Welcome to the org.Sc.sgd.db annotation Package. This is an organism specific package. The purpose is to provide detailed information about the species abbreviated in the second part of the package name org.Sc.sgd.db. This package is updated biannually.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgd, org.Sc.sgd.db
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org.Sc.sgdCHR is an R object that provides mappings between ORF identifiers and the chromosome that contains the gene of interest.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdCHR
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org.Sc.sgdCHRLENGTHS
(Package: org.Sc.sgd.db) :
A named vector for the length of each of the chromosomes
org.Sc.sgdCHRLENGTHS provides the length measured in base pairs for each of the chromosomes.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdCHRLENGTHS
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org.Sc.sgdCHRLOC is an R object that maps ORF identifiers to the starting position of the gene. The position of a gene is measured as the number of base pairs.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdCHRLOC, org.Sc.sgdCHRLOCEND
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org.Sc.sgdCOMMON2ORF is an R object that maps the yeast common names (gene names and aliases) to the corresponding yeast ORF identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdCOMMON2ORF
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org.Sc.sgdDESCRIPTION
(Package: org.Sc.sgd.db) :
An annotation data file that maps Open Reading Frame (ORF)
org.Sc.sgdDESCRIPTION maps yeast ORF identifiers to descriptive information about genes corresponding to the ORF identifiers
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdDESCRIPTION
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org.Sc.sgdENSEMBL
(Package: org.Sc.sgd.db) :
Map Ensembl gene accession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBL is an R object that contains mappings between SGD Gene identifiers and Ensembl gene accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdENSEMBL, org.Sc.sgdENSEMBL2ORF
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org.Sc.sgdENSEMBLPROT
(Package: org.Sc.sgd.db) :
Map Ensembl protein acession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBL is an R object that contains mappings between SGD Gene identifiers and Ensembl protein accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdENSEMBLPROT, org.Sc.sgdENSEMBLPROT2ORF
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org.Sc.sgdENSEMBLTRANS
(Package: org.Sc.sgd.db) :
Map Ensembl transcript acession numbers with SGD Gene identifiers
org.Sc.sgdENSEMBL is an R object that contains mappings between SGD Gene identifiers and Ensembl transcript accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: org.Sc.sgdENSEMBLTRANS, org.Sc.sgdENSEMBLTRANS2ORF
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