Example data set (TilingFeatureSet) on leaf development in the plant Arabidopsis thaliana [1] for use of the waveTiling package. The data set contains 6553600 features and 18 samples. Transcriptome analysis was conducted for 6 developmental time points (day 8 to day 13), with 3 biological replicates per time point. The focus of the initial study was to unravel the underlying mechanisms of on one hand the transition from cell division to cell expansion and on the other hand the transition from non-photosynthetic to photosynthetic leaves.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: leafdev
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Example data set (TilingFeatureSet) on leaf development in the plant Arabidopsis thaliana for use of the waveTiling package. The data are taken from [1]. The dataset contains the background-corrected and quantile-normalized expression data
● Data Source:
BioConductor
● Keywords: datasets
● Alias: leafdevBQ
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Example WfmFit-class object as output after fitting the wavelet-based functional model to the leafdev data for the forward strand of chromosome 1.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: leafdevFit
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Example WfmInf-class object as output after transcriptome analysis of the leafdev data for the forward strand of chromosome 1, using pairwise comparisons between the different time points.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: leafdevInfCompare
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Example mapFilterProbe-class object as output after filtering redundant probes (PM/MM and/or forward/reverse strand) and remapping the probes to the Arabidopsis thaliana TAIR9 genome sequence.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: leafdevMapAndFilterTAIR9
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