R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 13 found.
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snp.list (Package: ARTP) :

The list to describe the genotype data for runPermutations

● Data Source: CranContrib
● Keywords: misc
● Alias: snp.list
● 0 images

obs_pvalues (Package: ARTP) :

Sample file of observed p-values for the example in ARTP_pathway

● Data Source: CranContrib
● Keywords: data
● Alias: obs_pvalues
● 0 images

gene.list (Package: ARTP) :

The list to describe the gene-SNP file for ARTP_pathway

● Data Source: CranContrib
● Keywords: misc
● Alias: gene.list
● 0 images

ARTP (Package: ARTP) :

An R package for computing gene and pathway p-values using the Adaptive Rank Truncated test. This package can be used to analyze pathways/genes based on a genetic association study, with either a continuous or a binary case-control outcome.

● Data Source: CranContrib
● Keywords: package
● Alias: ARTP
● 0 images

runPermutations (Package: ARTP) : Calculate observed and permutation p-values for SNPs

Calculate observed and permutation p-values for SNPs

● Data Source: CranContrib
● Keywords: model
● Alias: runPermutations
● 0 images

single.marker.test (Package: ARTP) : Single SNP test

Perform an association test for 1 SNP

● Data Source: CranContrib
● Keywords: model
● Alias: single.marker.test
● 0 images

pheno_data (Package: ARTP) :

Sample covariate and response data for runPermutations

● Data Source: CranContrib
● Keywords: data
● Alias: pheno_data
● 0 images

gene_SNP_data (Package: ARTP) :

Gene-SNP data file for ARTP_pathway

● Data Source: CranContrib
● Keywords: data
● Alias: gene_SNP_data
● 0 images

pheno.list (Package: ARTP) :

The list to describe the covariate and outcome data for runPermutations

● Data Source: CranContrib
● Keywords: misc
● Alias: pheno.list
● 0 images

perm_pvalues (Package: ARTP) :

Sample file of permutation p-values for the example in ARTP_pathway

● Data Source: CranContrib
● Keywords: data
● Alias: perm_pvalues
● 0 images