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Last data update: 2014.03.03

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AnnotationHubRecipes-package (Package: AnnotationHubData) :

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

● Data Source: BioConductor
● Keywords: package
● Alias: AnnotationHubRecipes, AnnotationHubRecipes-package
● 0 images

AnnotationHubMetadata-class (Package: AnnotationHubData) : Class code{"AnnotationHubMetadata"

AnnotationHubMetadata is used to represent record(s) in the server data base.

● Data Source: BioConductor
● Keywords: classes
● Alias: AnnotationHubMetadata, AnnotationHubMetadata-class, HubMetadata, HubMetadata-class, class:AnnotationHubMetadata, class:HubMetadata
● 0 images

ImportPreparer-class (Package: AnnotationHubData) : Class code{ImportPreparer

The ImportPreparer and derived classes are used for dispatch during data discovery (see newResources). There is one ImportPreparer class for each data source for AnnotationHubMetadata.

● Data Source: BioConductor
● Keywords: classes
● Alias: getImportPreparer, newResources
● 0 images

flog (Package: AnnotationHubData) : flog

Write logging message to console and a file.

● Data Source: BioConductor
● Keywords: classes
● Alias: flog
● 0 images

makeEnsemblFasta (Package: AnnotationHubData) :

Transform an Ensembl FASTA file to a Bioconductor FaFile or ToBitFile.

● Data Source: BioConductor
● Keywords: methods
● Alias: ensemblFastaToFaFile, ensemblFastaToTwoBitFile, makeEnsemblFasta, makeEnsemblFastaToAHM, makeEnsemblTwoBitToAHM
● 0 images

makeGencodeFasta (Package: AnnotationHubData) :

Create metadata and process raw Gencode FASTA files for inclusion in AnnotationHub

● Data Source: BioConductor
● Keywords: methods
● Alias: gencodeFastaToFaFile, makeGencodeFasta, makeGencodeFastaToAHM
● 0 images

updateResources (Package: AnnotationHubData) : updateResources

Add new resources to AnnotationHub

● Data Source: BioConductor
● Keywords: methods
● Alias: updateResources
● 0 images

upload_to_S3 (Package: AnnotationHubData) :

This function is for uploading a file resource to the S3 cloud.

● Data Source: BioConductor
● Keywords:
● Alias: AWS, S3, amazon, upload_to_S3
● 0 images