Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 4 of 4 found.
[1] < 1 > [1]  Sort:

ArrayTV-package (Package: ArrayTV) :

Correct gc biases in array data. The user must provide a range of windows and this function will compute the tv score for each window and correct the arrays based upon the window with the highest tv score (i.e with window showing the most gc bias)
● Data Source: BioConductor
● Keywords: package
● Alias: ArrayTV, ArrayTV-package
● 0 images

gcCorrect-methods (Package: ArrayTV) : Methods for code{gcCorrect

Correct gc biases in array data for arrays stored as objects of an acceptable class. The user provides the array data and a range of windows and these methods will format the data and call gcCorrectMain. This function computes the tv score for each window and corrects the arrays based upon the window with the highest tv score (i.e with window showing the most gc bias)
● Data Source: BioConductor
● Keywords: methods, regression, smooth
● Alias: gcCorrect, gcCorrect,BafLrrSet-method, gcCorrect,BafLrrSetList-method, gcCorrect,BeadStudioSet-method, gcCorrect,matrix-method, gcCorrect-methods
● 0 images

gcCorrectMain (Package: ArrayTV) :

Correct gc biases in array data. The user must provide a range of windows and this function will compute the tv score for each window and correct the arrays based upon the window with the highest tv score (i.e with window showing the most gc bias)
● Data Source: BioConductor
● Keywords:
● Alias: gcCorrectMain
● 0 images

computeGC-methods (Package: ArrayTV) : Compute the GC composition for selected windows

Compute the GC composition for selected windows around a vector of genomic positions (e.g., locations of markers on an array)
● Data Source: BioConductor
● Keywords: methods
● Alias: computeGC,BafLrrSetList-method, computeGC,numeric-method, computeGC-methods
● 0 images